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Export tables of overlapping genes when using GOVenn

Hello everyone

I'm using GOVenn in RStudio to find overlapping differentially expressed genes between datasets.

My command:

GOVenn(dt1, dt2, d3, title = "Overexperessed genes", label = c("CPC vs CPP", "CPC vs aCPP", "aCPP vs CPP)), plot = F)

The result is a nice Venn diagram and tables of overlapping genes presented in the Console. There are thousands of genes in each table, so the result is not fully displayed. I don't mind much if it's not fully displayed, but I want to export those tables into .csv files and can't find an instruction for this.Could anyone please help me with this issue?

Thank you very much.

overlapping genes govenn
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written by Kim • Kim

Try to read and understand the help function (?GOVenn), it says that the GOVenn function returns a list of two items. The first item can be accessed by plot, and the second with alist(table). Did you try that?

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written by Benn Benn

Thank you very much. It's not very straightforward but I can get the table now

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written by Kim • Kim

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