This is a test version of Biostars. For the public version, visit https://www.biostars.org.
NCBI Taxon ID to IMG Genome IDs

I have a bunch of NCBI taxon IDs and I want to find there IMG genome IDs.

I can try HTML parsing, but the link I get when I type a particular ncbi taxon ID is not unique.

For example,

when I search for ncbi taxon id 115711, I get the following link opened

https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=FindGenomes&page=displayTaxonList&searchFilter=t.ncbi_taxon_id&searchTerm=115713&file=t.ncbi_taxon_id9660

the above link has 9660 as an ID which is specific to that link, thus making the automation for each ncbi taxon id difficult.

Is there an easy way to fetch the corresponding IMG genome IDs for given NCBI taxon IDs?

taxon html

0 answers

No answers yet.

Log in to answer this question.