Want to know which group is taken as control and which one is treated
I used ballgown package to get fold change and I got the output but I don't know output file is for control vs treatment or treatment vs control?
I know too basic question but I am new to this please help
Thank you in advance
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shivam.ios197 •
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Exactly, please add some information what you did and what you want to know. Do you mean that you are unsure that in case of a FC > 0 which sample was the denominator in
sampleGroup1/sampleGroup2?hello，i have the same question as his now , it is just exactly what you have described , can you share your opinion though this problem , thank you very much
hi , i am a newer to ballgown ,and this question does confuse me , in the original paper,it didnt clear why "fc" is female versus male ,and i do hope you could notice this reply ,thank you very much!!!
Please open a new question. I have actually no clue what you are talking about. Please add the necessary details and clearly explain what the problem is.
ok,i have opened a new question ,hoping to reply