I'm interested in detecting driver genes in some cancer biopsies that have been sequenced using hg38 as the reference. I've looked at three programs so …
I want to use ABSOLUTE, so I read documentation at http://software.broadinstitute.org/cancer/software/genepattern/modules/docs/ABSOLUTE and run example data (solid_tumor) by GenePattern ABSOLUTE modules. However I cannot reproduce this …
I downloaded ABSOLUTE example data from <http://software.broadinstitute.org/cancer/software/genepattern/modules/docs/ABSOLUTE/2>. When I checked the input segment file and result data, I find very confusing column marked as "copy_ratio". …
Hi all, I am using the **R package ABSOLUTE** and ran the function **RunAbsolute** . My segment file (absolute.segment.numonly) looks like this: Chromosome Start End …