This is a test version of Biostars. For the public version, visit https://www.biostars.org.
protein domain "official" DB

I'm working on some variants (exome, human) and I found the different outputs printed for each domain by VEP, e.g. : ex. VAR 1-949422-G-A : Gene3D:3.10.20.90&Pfam_domain:PF00240&PROSITE_profiles:PS50053&hmmpanther:PTHR10666&hmmpanther:PTHR10666:SF81&SMART_domains:SM00213&Superfamily_domains:SSF54236&Low_complexity_(Seg):seg I'd like to know from you expert guys, is there, among all these domains, a more "official" or "widely utilized" one?

Thank you very much for any help!

vep domains protein human variation
• 2,787 views • link
written by cocchi.e89 cocchi.e89

There is nothing "more" or "less" official. All the sources listed are valid domain databases.

• 0 views • link
written by GenoMax GenoMax

I know, but I'd like to know if there's a more maintained, widely used etc. Maybe there's not

• 0 views • link
written by cocchi.e89 cocchi.e89

Pfam, PANTHER, PROSITE all do regular releases/updates so are certainly being actively curated.

• 0 views • link
written by GenoMax GenoMax

thank you very much @genomax

• 0 views • link
written by cocchi.e89 cocchi.e89

0 answers

No answers yet.

Log in to answer this question.

More posts like this

No similar posts found.