loadings threshold in snpzpi flag from adegenet · Biostar

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loadings threshold in snpzpi flag from adegenet

Hi, I have a question regarding DAPC in the adegenet package.

I am doing GWAS with the aforementioned program and I want to know at which level of contribution I want to keep my genes for further analysis. I am getting a big list of genes but definitely not all of them have the same association level. Is there a way to access the threshold calculated by the snpzip function when calculating loadings contributions? I cannot find out how to extract it automatically from the pipeline.

Thank you.

adegenet gwas

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written 7.1 years ago by Seb_Lopez •

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