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Bootstrap values on the phylogenetic tree in Ape r package

Hi there, I've constructed the tree with bootstrap supports in Ape package. But i'd prefer to get bootstrap values in percentage not in absolute number of replications. How can i do that in Ape?

r phylogenetics
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written by Denis Denis

Access the values in the returned object and divide by the number of bootstrap samples.

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written by Jean-Karim Heriche Jean-Karim Heriche

There is no slot named node.label in my object of class 'phylo' (i use ape 5.3). So i can not execute something like:

tree$node.label <- as.numeric(tree$node.label)/1000
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written by Denis Denis

Maybe show then what you do have. Some code might also be useful.

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written by Benn Benn

1 answer

I solved the issue by the R code:

plot(stree)
nodelabels(round(myBoots/1000*100),adj = 0.7)

where myBoots is numeric vector containing my bootstrap values

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written by Denis Denis

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