CAF cells identification

Hi, I have a dataset (from GEO) that includes the expression values of multiple tumor cells and normal cells. I would like to know the expression of CAF cells and have the signature of the relevant genes... How can i do it? or is there a simpler way to find the expression of CAF cells?

Thanks

rna-seq gene

• 949 views • link

written 7.1 years ago by rotemkat •

0 answers

No answers yet.

More posts like this

Trouble with CIBERSORTx: All P-values > 0.05, Low Correlation, High RMSE – What Could Be Going Wron…
written 1.3 years ago by Pumla •

Hi everyone, I'm working on bulk RNA-seq data from The Cancer Genome Atlas (TCGA), which includes both tumor and matched normal tissue samples. My goal …
Can I compare Gene Expression in T Cells from PBMCs vs. Tumor Tissue (for match samples)?
written 1.5 years ago by Saeedeh Salehi •

I have a single-cell RNA-seq dataset that includes: 16 PBMC samples from tumor patients and 4 healthy individuals 16 Tumor tissue samples from the same …
Identifying tumor vs normal cells in scRNAseq samples
written 3.9 years ago by bompipi95 •

Hi everyone, I currently have the gene expression matrix for mouse scRNA-seq bladder samples in WT vs KO conditions. These samples contain a **mixture of …
How to create a new gene signature from RNAseq data
written 4.0 years ago by avelarbio46 •

Hello everyone! We have characterized a type of cell that is different in its functions from other cells in general. We would like to create …
Identifying cancer subtypes
written 5.5 years ago by glady

Hello, A bulk tumor data is made up of a complex microenvironment: stromal cells, fibroblasts, tumor cells, etc. Are there any machine learning or clustering …
Tumor subtype: nearest centroid classifier
written 9.2 years ago by ddjima2014 •

I have a signature genes similar to pam50 (breast cancer signature) from other tumor. How should I use "intrinsic.cluster" OR "intrinsic.cluster.predict()" function in genefu package …
Normal Patient Samples from GSE62944
written 10.4 years ago by hAjmal •

Hello, I am trying to do Differential Expression Analysis of Genes of Normal vs. Breast cancer patients. For that ourpose, I chose GEO data GSE62944 …
How to combine expression values of multiple probes for one gene?
written 11.1 years ago by ayanava18 •

I am a bit new to R Bioconductor and microarray analysis. I have loaded a GEO series matrix file (GSE2990) from GEO database in R …
Differential gene expession analysis in cell populations of mixed tumor and normal cells
written 11.7 years ago by Christian

I am wondering about the correct experimental design for differential gene expression analysis in the following atypical setup. We have several patients from which we …
Gene Expression Dataset For Breast Cancer Using Case-Control
written 13.4 years ago by J.F.Jiang

Hi all, I want to collect a expression dataset for breast cancer as a validation for my project. But I did not find any good …