Getting Hi-C contact matrix from single cell experiment

I require the Hi-C contact matrix for an experiment. What should be done to extract structural information (Hi-C contact matrix) for each cell line and each cell from this single cell Hi-C experiment?

Ramani, V. et al. Massively multiplex single-cell Hi-C. Nat Methods 14, 263- 266 (2017). - Shendure lab https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5330809/
Dataset: GSE84920

hi-c single-cell

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updated 7.1 years ago by Biostar

• written 7.1 years ago by somnath52 •

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