How to convert known motif to motif.meme format?
Hi,
I have a known motif [GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-LIVMFY-Y- [ND]-x(3)-[LIVMF]-x-[KNDE] how to convert it to <motif file=""> motif.meme format?
fimo [options] <motif file=""> <sequence file="">
I want to search motifs in my Fasta sequences.
Thank you
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You might be able to hack the meme file but meme represents motifs with more information than regular expression. If you have the input sequences you better run meme on them. If not, use other software to detect the motif