Mira assembler with IonTorrent unpaired reads
Hello everyone!
I am new to the world of assembling genomes and would like to run the Mira with IonTorrent unpaired reads. But assembly results in empty files.
The first step is to create a manifest file and then run:
mira manifest.conf> & log_assembly.txt
Below is the manifest file:
"project = MyFirstAssembly job = genome,denovo,accurate
readgroup = SomeUnpairedIonReadsIGotFromTheLab data = ../../assemblies/1sttrial/Coryne_1M.fastq technology = iontor"
Where is the error?
• 1,250 views
•
link
written
by
gustavojorge080 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
MIRA runs yielding different assemblies with same input data and parameters
written by btc347 •
-
Mira assembler with IonTorrent
written by gustavojorge080 •
-
Mira assembler with IonTorrent
written by gustavojorge080 •
-
Re-running MIRA using a Python script
written by Burgenix •
-
De novo transcriptome assembly of low amount of Illumina reads with MIRA
written by Andrés Ribone •
-
MIRA for metagenome assembly
written by Rahul Sharma
-
Hybrid assembly of 454 and sanger transcriptome data using MIRA
written by lewis.stevens07 •
-
Mira 4 Mapping Error
written by HG
-
Mira4 Assembler Taking Too Long Time And Using All Memory For Denovo, Est Assembly
written by nbvasani
-
Programs/Parameters For De Novo Transcriptome Assembly Of Ion Torrent Reads?
written by Ahdf-Lell-Kocks •
