More posts like this
-
Multi-Sequence Alignment Tool
written by Daniel 4Hello, I am trying to figure out which multi-sequence alignment tool to use, and it has been quite difficult to find papers/threads about the tools …
-
HGT analysis with comparem
written by naiannegri 0Hey guys, I'm trying to interpret the relevant data from the output command lgt_di and lgt_codon analysis from comparem Where can I find the threshold …
-
LTR-Harvest false positives (Maker repeat library construction)
written by timo.metz 0Hey there, currently I want to to a genome annotation using maker. For the repeats I followed the following protocol: http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/Repeat_Library_Construction-Advanced In there they use …
-
Forum: Doctor looking fertility for a collaborator for text mining on pubmed
written by jeromebouaziz 0I'm a doctor expert in fertility and especially in endometriosis. I saw good examples on how text mining on pubmed database and genes understanding could …
-
Algorithmic Difference between MACS and MACS2
written by taraeicher 5I think I have a pretty good understanding of how the MACS algorithm works. In a nutshell: 1. Remove duplicate reads. 3. Model a Poisson …
-
How to interpret gene-FDR plots
written by r.monil 0Hello everyone. I am new to bioinformatics. I was wondering if someone could kindly explain to me how to interpret gene-FDR plots. I'm not sure …
-
any tutorials for structural variants filtering and prioritization
written by Ming Tommy Tang 469Outputs from structural variants callers like breakdancer, lumpy and delly contains false positives. How do you filter out those false positives and then prioritize the …
-
Is there any falsepositive filter script for INDELS like the fpfilter.pl?
written by ivivek_ngs 522I am trying to compare the results of INDELS from VarScan2 and Lofreq. Lofreq is already treated for false positives internally but to compare I …
-
Tool: Omicia Opal Research - Variant Annotation and Disease-Gene Prioritization
written by Moses M. Feaster 3**Omicia's [Opal Research**][1] is an SaaS platform that integrates a comprehensive, automated genome annotation engine with the VAAST variant prioritization tool to rank gene variants …
-
Computational Approach For Identifying Gene Families Apart From Similarity Search Based Methods(Rei…
written by chevivien 9<p>Hallo ...i want to identify R gene family in a particular crop..from my literature review some studies has been done on the same using reiterative …