Entering edit mode
4.8 years ago
jennygenome
•
0
Hi All,
- In our dataset, we observe the STAR+HTSeq counts are almost double for everygene compared to STAR+RSEM counts. Is there an explanation for this and how to interpret it?
ENSG00000179934.6 HTSeq_Counts RSEM_expected_count Ratio(HTSeq/RSEM) SAMPLE1 3350 1849 1.812 SAMPLE2 2668 1535 1.738 SAMPLE3 36 19 1.895 SAMPLE4 2647 1423 1.860 SAMPLE5 3120 1811 1.723 SAMPLE6 3234 1775 1.822 SAMPLE7 677 364 1.860 SAMPLE8 589 329 1.790 SAMPLE9 573 270 2.122 SAMPLE10 662 352 1.881
You are probably going to have to put the command lines you used.