This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Network modeling of data produced by mixOmics (R) in Cytoscape

Hey guys,

I'd like to visualize a network / relationships between two types of data(transcriptome data vs promote data) The network() function (Relevance Network) of the mixOmics R package suggests to save results as the graph object that can be used by Cytoscape to improve visualization. I've check the Cytoscape Apps, and couldn't find any relevant plug-ins. Omics Visualizer - is not relevant to this task.
OmicsAnalyzer - doesn't have valid instructions (The requested URL /~jlv/omicsanalyzer/OmicsAnalyzer_Tutorial_Data_Import.pdf was not found on this server.)

Just wondering if there is a Cytoscape plug-ins that helps to improve visualization generated by mixOmics (R)? Or maybe any other way of visualizing multi omics datasets generated by mixOmics ?

Would appreciate any suggestions.

thank you.

cytoscape mixomics network multiomics
• 2,473 views • link
written by IrK IrK

I found the igraph tutorial today, will try it out :) thanks for the prompt reply.

• 0 views • link
written by IrK IrK

0 answers

No answers yet.

Log in to answer this question.

More posts like this