I have read in some papers; such as : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5282756/
It stablishes that a SNP is real when it has a depth >=10, mapping quality >=20 and SNP quality > =15
It stabilish that the average coverage =500, central base quality >=20 and SNP frequency >=35%.
It quite confused, because each article establishes a different criteria
Is there any consensus idea about these parameters?
Where can I see the average coverage and central base quality? Thanks in advantage