R package to calculate ancestral state characters using maximum parsimony?
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4.9 years ago
DNAngel ▴ 250

Hello,

I was wondering if anyone knew of a program or R package that calculates ancestral character states of discrete traits (i.e. habitat, skin colour) using maximum parsimony? The ape package utilizes models that are all likelihood based. I want to implement both methods and compare the results but I can't find a good tutorial/package that explicitly uses parsimony only.

Thank you!

R maximum parsimony ancestral states • 992 views
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