Comparing 2 methods to identify CNVs using WGS data
I have 2 method to find CNVs using WGS (whole genome sequencing) data. for both of them I have calculated CNV z-score for every chromosome arm. now I want to compare these 2 methods to see which one is more precise to detect CNVs. so the question is: how can I compare these 2 methods considering the fact that I have z-scores for every arm? is calculating R2 a good method for this comparison?
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