If you have the replicate, you can take the consistent peaks called in both replicates. There will be variability in ChIP-Seq data, so sometimes you may want to consider union of peaks instead of intersections.
Regarding peak profile, by control do you mean input ? or control in the sense of WT/KO ? You can plot both the treated and control using deeptools2 so that it will be clear that both separated if that's the intention. For UCSC tracks, I would get the bigwigs with -log10(p-value), to show enrichment over inputs.