Question

Question on patterns search in DNA sequences

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4.9 years ago

savella.417 • 0

Greetings.

I am looking for tools that could search for ambiguous sequence patterns in the DNA sequences: for example YYYGGGYYRRGGCYYY or using a weighted matrix

Thanx

genome sequence sequencing • 981 views

ADD COMMENT • link updated 4.9 years ago by max.rempel2 • 0 • written 4.9 years ago by savella.417 • 0

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Your pattern doesn't looks like DNA you should describe more your question. Maybe you speak about blastx

ADD REPLY • link 4.9 years ago by Titus ▴ 910

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The pattern is using IUPAC codes - basically Y are pyrimidines and R are purines.

ADD REPLY • link 4.9 years ago by max.rempel2 • 0

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Ok so , seaching pattern in databases ? genomes ?

I try blast accept R and .

ADD REPLY • link 4.9 years ago by Titus ▴ 910

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I am interested too.

ADD REPLY • link 4.9 years ago by max.rempel2 • 0

score 0 · Answer 1 · 2019-05-23

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4.9 years ago

max.rempel2 • 0

Ugene is a windows program and it does that (only in one strand, but still pretty useful).

ADD COMMENT • link 4.9 years ago by max.rempel2 • 0