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Question on patterns search in DNA sequences
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16 months ago

Greetings.

I am looking for tools that could search for ambiguous sequence patterns in the DNA sequences: for example YYYGGGYYRRGGCYYY or using a weighted matrix

Thanx

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Your pattern doesn't looks like DNA you should describe more your question. Maybe you speak about blastx

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The pattern is using IUPAC codes - basically Y are pyrimidines and R are purines.

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Ok so , seaching pattern in databases ? genomes ?

I try blast accept R and .

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I am interested too.

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16 months ago

Ugene is a windows program and it does that (only in one strand, but still pretty useful).

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