Biopython coding, sublist from list dependently by id
Hey, I need help, I do not know how to deal with it:
list_of_ids = [aasddaw23/2-20,aasddaw23/34-50,aasddaw23/67-100,fyyrr43/67-98,fyyrr43/80-120,poipoopop34/33-200,poipoopop34/144-222]
#grouped list
result = [[aasddaw23/2-20,aasddaw23/34-50,aasddaw23/67-100],[fyyrr43/67-98,fyyrr43/80-120],[poipoopop34/33-200,poipoopop34/144-222]]
The list should be divided depending on the id on the sub-lists I'm writing a simple program for linking amino acid sequence substrings, but I've come across this problem
thanks in advance
1 answer
Not entirely sure the purpose of this grouped list and how Biopython plays a role here. Generally speaking, groupby is likely your friend when it comes to stuff like this.
from itertools import groupby
[[x for x in g] for k,g in groupby(sorted(list_of_ids), lambda x: x.split('/')[0])]
Log in to answer this question.
More posts like this
-
Nebula 30x read length distribution
written by berndmann •
-
How to change the number of seeds/predictions run by Alphafold
written by umjpyw •
-
Help with PCA plot from SNPRelate
written by elielsonveloso •
-
Removing adapters for assembly
written by Ric
-
Strange length of merged paired-end sequencing reads after using BBmerge
written by bioplanet •
-
RNA Seq correlation with P value
written by peris
-
Mauvealigner Error
written by HG
-
Protein Count Matrix In Perl
written by loicatraile •
-
Extracting Set Of Numbers From A File
written by Cynthia •
-
Synonmous And Non Synonmous Snps
written by Payal
