Finding % conserved proteins
Hi all,
I have a fungi specie of interest and I want to see how many of its proteins are conserved with other fungi species and then other eukaryotic species (e.g yeast). I have protein sequences for my fungi species of interest plus 10 other fungi species. What software/tool would your recommend in doing this? It will be my first time so any suggestions/recommendations are very helpful.
Thank you!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
eggNOG versus Diamond blastp
written by young_bioinformatician
-
Question regarding finding orthologs using proteins of interest and OrthoFinder
written by Introvertebrate •
-
Check Conservation of a Given Protein Domain
written by DVA
-
Designing primers to detect different fungi species from a complex soil sample
written by ser •
-
Protein sequence and atomic sequences of different species are almost similar
written by Naresh
-
How to: Protein-protein interaction networks for non-model organisms (marine bivalve)?
written by mo_vo_ •
-
cegma : output report
written by du.ma •
-
Finding an exactly conserved amino acid sequence in a particular protein.
written by siddharth.avadhanam •
-
Variant Effect Prediction In Non-Human Organisms
written by Rubal7 •
-
Obtaining A Fasta With Conserved Region Near A Gene In Ucsc Genome Browser
written by Anima Mundi
blastpshould be fine for what you are looking for. With new blast+ package you can limit results by using ataxid(use4751to cover all fungi) withnrdatabase.