How to get wikipathways without disease and cancer ontologies?

Question

[Gabriel]

I am doing GSEA on RNA-seq data and I am using the file from here: http://data.wikipathways.org/current/gmt/

In this file, there are pathways such as "WP4217 Ebola Virus Pathway on Host" which I am not interested in.

Where can I find the wikipathways without disease ontologies?

[jared.andrews07]

I doubt there is a file with exactly what you want removed. You will likely have to remove them yourself.