Motive finder - aminoacids
Help!
I am looking for software to help me spot tandem repeats in my DNA chunks (such as e.g. http://tandem.bu.edu/trf/trf.advanced.submit.html or http://archive.gramene.org/db/markers/ssrtool). However, all the existing tools focus on ACGT data, and my DNA data is in a form of amino acids, e.g.:
kneqineyknkyqknntyqseqncdikqyyekneqineykdkyqknntyqseqncdi ntldikqvtnqiedikseqnnvysnitenpffntdeyeinhsfnniheyndtdkneyikn nvdneeeesieknifdniiceklqnilnngiesfiqeiqfilehlkkki
I tried searching for existing software, but I failed. Would you happen to be able to help me find something that would work with such data format?
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Like K-mer enrichment analysis ?
It does not seem to be capable of doing that.