thank you very much !
• 0 views
•
link
written
by
bangbang3332 •
How To Compute A Local Multiple DNA Sequence Alignment?
i don't know how to procedure A LOCAL Multiple DNA Sequence. should i use cluster omega? how should i set? thank you!
• 1,268 views
•
link
updated
by
Buffo
•
written
by
bangbang3332 •
•
written
by
bangbang3332 •
1 answer
It depends on what are you looking for, there are a lot of aligners by command line or web-based, web-based is usually limited to specific maximum entries while the command line-based doesn't. You used the "assembly" tag in your question, be aware that alignment is not an assembly.
Log in to answer this question.
More posts like this
-
Multiple sequence data from same DNA sample
written by Hirofumi •
-
Percent identity matrix from ClustalOmega/Clustalw with Biopython
written by sean.cascarina •
-
Interpret Clustal Omega Distance/Percent Identity Output for Multiple Proteins
written by taojincs •
-
population stratification using PLINK
written by fatma.mokhtar •
-
how can I predict the interface site of RNA with protein
written by bangbang3332 •
-
how to change the branch's order?
written by bangbang3332 •
-
Clustering amino acids sequences to detect homologies
written by ddowlin
-
Why Use Pcr Instead Of Cheaply Multiplying The Data Set Afterwards With Software?
written by Herpson •
-
Searching For A Common Pattern In A Set Of Dna Sequences
written by Pappu
-
Python Program, Gene Density And Recombination
written by User 4651 •
I would use MAFFT or MUSCLE for DNA, though ClustalO will work too. Simply feed the program your data (read the output of
—helpor the manual.Unless you have specific requirements, I would not alter any parameters.