Export File Error In R ?
Hi , I executed the following code with that error Error in basename(file) : a character vector argument expected . Any suggestions?
if (!requireNamespace("BiocManager"))
install.packages("BiocManager")
BiocManager::install()
library(CellNOptR)
network =readSIF("C:/Users/T440s/Desktop/network.sif")
file = file.create("C:/Users/T440s/Desktop/network.sbml")
toSBML(network,file, bitString = c(rep(1,length(network$reacID))),version=c("standard","cellnopt"))
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is
filedefined?SURE I created one named file
Please share the line where you defined
filefile = file.create("C:/Users/T440s/Desktop/network.sbml")
And just with :
To add to Bastien's point, the
fileargument to theCellNOptR::toSBMLfunction is the name of the file to save to (according to the manual), which is a plain string.file.create(as with all file manipulation operations of its class) returns a boolean value based on if the operation succeeded (see the relevant manual. You're passing aTRUE/FALSEvalue to a parameter than expects a filename string.