How do I creat an expressionset if there is no GDS listed on the GEO database?
Hello
I have been using the GEOquery package to create expression sets from data taken from NCBI gene expression omnibus (GEO) database. However, I have ran into a problem. Most of the studies that are useful to me do not have a GDS listed. They have GSE, GSM, and GPL but, I use the command gds<-getGEO("GDS4061") to start with, and then do eset <- GDS2eSet(gds,do.log2=TRUE) to convert GDS into an expression set, so I assume the GDS class is necessary. Can somebody suggest how to overcome this problem please?
Thank you
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pgurkirat •
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Cross-posted on Bioconductor: https://support.bioconductor.org/p/120226/
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