I need to download the entire human genome in the SRA format, by toollkit, but when I do the search instead of returning an SSR code I get a DRR code, and when I put in the toollkit the following message:
"2019-04-18T13:42:17 prefetch.2.8.2: KClientHttpOpen - connected to www.ncbi.nlm.nih.gov (130.14.29.110)
2019-04-18T13:42:18 prefetch.2.8.2: KClientHttpOpen - verifying CA cert
2019-04-18T13:42:18 prefetch.2.8.2 err: libs/vfs/remote-services.c:1650:EVPathInit: name not found while resolving query within virtual file system module - failed to resolve accession 'DRR142777' - no data ( 404 )
2019-04-18T13:42:18 prefetch.2.8.2: KClientHttpOpen - connected to www.ncbi.nlm.nih.gov (130.14.29.110)
2019-04-18T13:42:18 prefetch.2.8.2: KClientHttpOpen - verifying CA cert
2019-04-18T13:42:18 prefetch.2.8.2: KClientHttpOpen - connected to www.ncbi.nlm.nih.gov (130.14.29.110)
2019-04-18T13:42:19 prefetch.2.8.2: KClientHttpOpen - verifying CA cert
2019-04-18T13:42:19 prefetch.2.8.2 err: libs/vfs/remote-services.c:1650:EVPathInit: name not found while resolving query within virtual file system module - failed to resolve accession 'DRR142777' - no data ( 404 )
2019-04-18T13:42:19 prefetch.2.8.2 err: libs/vfs/resolver.c:3350:VResolverQueryPath: path not found while resolving tree within virtual file system module - 'DRR142777' cannot be found."
How do I get the complete genome in SRA?
The SRA I'm trying to get is the "Illumina HiSeq 2500 paired end sequencing of SAMD00131364 Accession: DRX135491"
already grateful
That does not make sense.
It looks like this data seems to have been released this week. Wonder if that is leading to issues you are having.
https://www.ncbi.nlm.nih.gov/sra/DRX135491 record seems to be odd in general. It is not showing any real read data either.
That! I really want the raw data but can not find it.
The command I used was: "prefetch -v DRR142777"
This record was made public earlier this week. It either has not been fully populated with data or there may be something wrong with the record. If you don't want to wait then I suggest that you email SRA support to let them know about this dataset.
How do I find support email?
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This is the link to the data I'm trying to download: Illumina HiSeq 2500 paired end sequencing of SAMD00131364
None of those records appear to have data.
Edit: See @arup's answer. This data is available from DDBJ. You can download it from there.