R color tree ggtree

Question

[maxixian1990]

I want to plot a phylogenetic tree. I want to color the tree according to groups. it seems that ggtree could do that. ggtree(tree,aes(color=group)). the group was sort by alphabetic. Is there any option to use a user list. so that some close group could have close color.

Thank you

Answer 1

[Luiz]

http://bioconductor.org/packages/release/bioc/vignettes/ggtree/inst/doc/treeVisualization.html

[Guangchuang Yu]

updated link, https://yulab-smu.github.io/treedata-book/chapter4.html.