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http://www.repeatmasker.org/species/hg.html
With that : https://github.com/vikas0633/perl/blob/master/cnv_repmask2gff.pl
Thank you.
Just a comment. It spit out the following message at the beginning:
Use of uninitialized value $ENV{"DP_GFF"} in uc at cnv_repmask2gff.pl line 50.Though seems to be doing what it is meant to.
Please use the "add reply" gray button below a comment to add a comment to mine, this keeps the thread well indent
I guess it is no big deal, it does not find the env variable
DP_GFF, which you do not need if you add this option to the command line :