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The following object is masked from package:base
1
Entering edit mode
14 months ago

Hi

I have installed the ballgown package for differential gene expression.

Now I called the library of the installed packages for differential gene expression. but I encountered the following errors (masked) while calling the libraries. Can you tell me how to solve these masked objects from the packages?

the called library as 

library(ballgown)

Attaching package: ‘ballgown’

The following object is masked from ‘package:base’:

    structure

library(RSkittleBrewer)
library(genefilter)
library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:ballgown’:

    contains, expr, last

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

library(devtools)
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3
Entering edit mode
3 months ago
ATpoint 17k
Germany

To be safe, you can always specify from which package a function is to be used, e.g. ballgown::expr like package::function

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3
Entering edit mode
5 months ago
zx8754 7.5k
London

conflicts() is a useful function to see function names that are present in multiple loaded packages, to be implicit which functions we use we can do packageName::functionName(). Relevant SO post:

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2
Entering edit mode
14 months ago
Belgium

Those messages are not errors and are completely normal. It just tells you that multiple packages which are loaded on your system use overlapping function names.

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