This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Error during running Trinity

Hello,

I have problem during running of the Trinity. It's fail with this error message:

Error, cmd: /home/pavel/Trinity-v2.8.4/trinity-plugins/BIN/ParaFly -c recursive_trinity.cmds -CPU 10 -v -shuffle  died with ret 256 at /home/pavel/Trinity-v2.8.4/Trinity line 2689.
    main::process_cmd("/home/pavel/Trinity-v2.8.4/trinity-plugins/BIN/ParaFly -c rec"...) called at /home/pavel/Trinity-v2.8.4/Trinity line 3354
    main::run_partitioned_cmds("recursive_trinity.cmds") called at /home/pavel/Trinity-v2.8.4/Trinity line 2334
    main::run_recursive_trinity("/mnt/d/20190401_sturgeon/trinity_de_novo/chrysalis/readsToCom"...) called at /home/pavel/Trinity-v2.8.4/Trinity line 2087
    main::run_chrysalis("/mnt/d/20190401_sturgeon/trinity_de_novo/inchworm.K25.L25.fa", "/mnt/d/20190401_sturgeon/trinity_de_novo/both.fa", 300, 500, "RF", "/mnt/d/20190401_sturgeon/trinity_de_novo/both.fa", "/mnt/d/20190401_sturgeon/trinity_de_novo/both.fa") called at /home/pavel/Trinity-v2.8.4/Trinity line 1706
    main::run_Trinity() called at /home/pavel/Trinity-v2.8.4/Trinity line 1345
    eval {...} called at /home/pavel/Trinity-v2.8.4/Trinity line 1344

Trinity run failed. Must investigate error above.

Do you have any idea, how to solve it, or where is the error?

Thanks

trinity software error

What was your command ? Paste it here

~/Trinity-v2.8.4/Trinity --seqType fq --max_memory 120G --samples_file samples_trinity.txt --SS_lib_type RF --CPU 10 --min_contig_length 300 --output trinity_de_novo --bflyCPU 10 --bflyHeapSpaceMax 10G;

0 answers

No answers yet.

Log in to answer this question.