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metavelvet assembly amos file generation for scaffolding
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15 months ago
meta-velvetg /backup/abhilash/velvet/ -ins_length 200 -exp_covs 9_7_5.5_2 -amos_file yes -scaffolding no


[meta-velvetg] Check command line options...
    OK. Your command line options seem to be good.


[meta-velvetg] Load meta-graph ...
[0.000000] Reading read set file /backup/abhilash/velvet//Sequences;
[2.149039] 11464422 sequences found
[11.185651] Done
[21.005417] Reading graph file /backup/abhilash/velvet//Graph2
[21.005446] Graph has 2388291 nodes and 11464422 sequences
[meta-velvetg] Category = 'short1'  Ave. = 200, SD = 20
[meta-velvetg] Category = 'short2'  Ave. = -1, SD = -1
[meta-velvetg] Category = 'long'    Ave. = -1, SD = -1
[meta-velveth] ...done (load meta-graph).

[meta-velvetg] Extract Subgraph ...
Segmentation fault (core dumped)

how to reslove this issue?

best regards

abhilash reddy

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Hi abhilashreddy495

Please read the below post and learn how to post questions on forums like Biostars

How To Ask Good Questions On Technical And Scientific Forums

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