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kmergenie show nothing
[zhangmj@node28 ~]$ [zhangmj@node28 ~]$ [zhangmj@node28 ~]$ kmergenie /pub4/zhuy/Taxus/0.data/dealdata/IS350_*_trim.*.f                         q.gz  -o ./result_haploid/haploid -l 15 -k 105 -s 10 -t 4 -e 200M  > haploid.log1.txt
    --one-pass   skip the second pass to estimate k at 2 bp resolution (default: two passes)
    -k <value>   largest k-mer size to consider (default: 121)
    -l <value>   smallest k-mer size to consider (default: 15)
    -s <value>   interval between consecutive kmer sizes (default: 10)
    -e <value>   k-mer sampling value (default: auto-detected to use ~200 MB memory/thread)
    -t <value>   number of threads (default: number of cores minus one)
    -o <prefix>  prefix of the output files (default: histograms)
    --debug      developer output of R scripts
[zhangmj@node28 ~]$ result_haploid
-bash: result_haploid: command not found

what is the problem? Does anyone know?

assembly
• 959 views • link
updated by Ram Ram • written by zhangmengjie • zhangmengjie

1 answer

It looks like you're trying to make a text file then look at it? If your text file is haploid.log1.txt, then use less, or cat:

less haploid.log1.txt

to view it.

• 0 views • link
updated by Ram Ram • written by colindaven colindaven

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