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How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?

Does anyone have experience in integrating and visualizing RNASeq / Proteomics data for metabolomics pathways?

Is there any user-friendly R package or free software available for this type of analysis?

Would be grateful if you could direct me to the right place with accessible examples/tutorials.

rna-seq r proteomics metabolomics
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updated by ariel ariel • written by WUSCHEL WUSCHEL

I'm just starting on a similar project, and I have no idea either (never done metabolomics). If I figure some stuff out, I'll get back to you :)

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written by ariel ariel

Very kind of you Ariel. Looking forward to it. If I come across any solution will keep you informed too. Thank you.

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written by WUSCHEL WUSCHEL

Can you elaborate on what you both want to do, and also give practical examples? When I see 'metabolomics', I think of an entirely different type of data, i.e., different from RNA-seq and proteomics. At a very basic level, you could simply mirror your analysis in both RNA-seq and proteomics and then check for enriched pathways.

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written by Kevin Blighe Kevin Blighe

It should state in the materials and methods how they generated these (?) Some appear to be customised, as if they were generated in a graphics editor, while at least one is definitively generated with pathview

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written by Kevin Blighe Kevin Blighe

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