This is a test version of Biostars. For the public version, visit https://www.biostars.org.
table to convert RS names to CHR-POS-REF-ALT (es GnomAD)

Dear all,

is there a table to convert (SNV and INDELs) rs names into CHR-POS-REF-ALT format?

Thanks a lot in advance for any help!

rs variant names nomeclature gnomad
• 5,291 views • link
written by cocchi.e89 cocchi.e89

What exact input data do you have, currently? - just a vector or list (in a file) of rs IDs?

• 0 views • link
written by Kevin Blighe Kevin Blighe

Thanks for reply. Just several rsIDs (I can create a file or a list if matters)

• 0 views • link
written by cocchi.e89 cocchi.e89

Please take a look at the answer by ATpoint. where at least 2 solutions can be found.

• 0 views • link
written by Kevin Blighe Kevin Blighe

1 answer

This has been asked before, please see:

Search dbSNP for hg19 based coordinates

SNP rs ID batch query

• 0 views • link
written by ATpoint ATpoint

Log in to answer this question.

More posts like this