Association database between repetitive elements and ncRNAs

Hi everybody,

Is there a database with validated associations between repetitive elements and ncRNAs? I mean specifying interaction or regulation between repetitive elements and ncRNAs?

Can someone help me?

Thanks !!

Iraia

repetitive elements ncrnas lncrnas mirnas

• 1,119 views • link

written 7.4 years ago by iraia.munoa

0 answers

No answers yet.

More posts like this

Comparison of Bisulfite sequencing results with Methylkit and edgeR
written 5.2 years ago by iraia.munoa

Hi everybody, I have been trying different tools to analyse the differentially methyted cytosines in bisulfite sequencing samples (control vs treatment). I have used on …
ceRNA network identification
written 6.0 years ago by xinhui.wang

Dear all, I am working on the interaction network between lncRNA, miRNA and mRNA and I am confusing with two questions, would be greatly appreciated …
CPM plot for individual genes
written 7.3 years ago by iraia.munoa

Hi! I am working with my DEGs list from `edgeR` with TMM normalization. I have seen in many publications that researches plot `log2(FPKM)` values for …
Problems with the reference genome in Stringtie
written 7.4 years ago by iraia.munoa

Hi everybody! I am using RNA-Seq protocol for identifying differentially expressed lncRNAs. I have used the reference genome from gencode: gencode.vM20.lncRNA_transcripts.fa I have build the …
Not clustered terms in david ontology functional annotation clustering
written 7.5 years ago by iraia.munoa

Hi everybody, I am using david ontology functional annotation clustering. The thing is that it results very few biological function groups and in the bottom …
Read coverage normalization
written 7.6 years ago by iraia.munoa

Hi everybody! I was wondering if there is a need of normalizing read coverage when converting bam results to bedgraph or bigwing for RNA-seq sample …
FEELnc and how to work with the results
written 7.6 years ago by iraia.munoa

Hi everybody, I am using FEELnc to annotate all lncRNAs present in my RNA-Seq samples. But when understanding the results I don't know how to …
miRNA-Gene Interaction P-Values
written 9.4 years ago by ilikebing2000 •

Hi everybody, I searched about 'miRNA-Gene Interaction' Databases through the web to find : A database which each of it's record specifies a **miRNA-Gene interaction …
Rockhopper with dUTP library preparation
written 9.4 years ago by blueInk •

Hello, Quick question: I have a dUTP RNAseq library prep. I would like to infer antisense ncRNAs with Rockhopper. Specifying read orientation as F/R or …
Is There A Database Or Web Service That Describes Drug-Protein Interaction
written 13.0 years ago by kewalyataruna •

<p>Hi I would like to ask you that is there any database which can help me to explore drug-protein interaction. If I have a protein …