Read counts of histone modification ' bam ' file
when i run this command in terminal it throws me this error. Commmand: bedtools multicov -bams E001-H3K4me1.bam E001-H3K4me3.bam E001-H3K9ac.bam -bed intersect.txt * Error *could not find the indexes please let me knoe if somebody can help... thanks.
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hello Sajad I use the same histone modification dataset (REMC) you use i tried to use the same bedtool method (multicov)to read counts of histone modification in my bam file bu i can't understand the bed file part in this method please can you explain what the bed file you use refer to ??