Problem with bedtools subtract
Hi, sorry to bother you, I've been trying to subtract information from one vcf file to another, but when I ran my script:
bedtools subtract -a int_important.vcf -b nt_no-important.vcf -header >int_real-important.vcf
is the following error,
terminate called after throwing an instance of 'std::length_error'
what(): basic_string::assign
Aborted (core dumped)
someone could tell me what my mistake is and how to fix it, thank you
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1 answer
This thread on the bedtools forums indicates that you're running out of memory: https://groups.google.com/forum/#!topic/bedtools-discuss/faEeLUgvb5o
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