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Annovar Output Interpretation

I'd like to ask a question. All of my variants that undergo the WES, was completely annotated in Annovar. however, some of the variants were denoted as a dot (.) and "Unknown" for the Exonic Function RefGene and Exonic FunctionKnownGene, while the other variants were annotated as frameshift, synonymous etc.

so, what does that mean for both dot (.) and "Unknown"? thanks in advance!

genome sequence

Please give an example of your output, my guess is that the variants are not exonic.

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