converting annovar-formated vcf files to bcf files
Hi, im trying to convert an Annovar-formatted (converted) VCF to BCF, so I can later merge the resultant bcf to a much bigger BCF file which contains the information on a big patient cohort. I get the following error:
bcftools convert -Ou 225_annv.vcf.gz > 225_S31.bcf
error: Failed to open 225_annv.vcf.gz: unknown file type
any suggestions? Thanks
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