ChIP-Seq tag counts
Hi Everyone,
Can I use tag counts from ChIP-Seq data as inputs for machine learning? I did not call peaks, however, so that the features will not be simply binary.
Thank you for your help. teabonng
• 1,502 views
•
link
updated
by
WouterDeCoster
•
written
by
druggable •
•
written
by
druggable •
1 answer
I'm not sure if it's useful, but there is no reason why you cannot use those. Just make sure you understand the technology and the biology before you start using machine learning on your data.
• 0 views
•
link
written
by
WouterDeCoster
Log in to answer this question.
More posts like this
-
Normalization of ChIP-Seq count matrix ??
written by Ankit
-
macs2 call peak
written by yiren •
-
Feature is predictive of gene expression but does not seem to be based on metaplots
written by druggable •
-
Neural networks feature importance
written by druggable •
-
Data Transformations for machine learning
written by druggable •
-
ChIP-Seq Read Counts
written by druggable •
-
Sam to bowtie native format
written by druggable •
-
Train classifier based on unsupervised clustering of genes
written by druggable •
-
peaks overlap: ATAC & CHIP seq
written by sophialovechan •
-
How To Calculate P-Value Of Circular Binary Segmentation?
written by syrup16g_TO •
