Hi!

I'm struggling with finding a way to annotate a manta structural variants VCF output with SV regions identifiers from DGV/dbVAR (esv/nsv). Direct annotation based on the exact reported chromosomal positions certainly would not work as most of the structural variants have imprecise start-end locations. I did not manage to find the desired functionality in VEP, snpeff, annovar and loads of other tools reported elsewhere. I would appreciate any information on this issue.

Thanks! Kirill