How to convert chromosomal coordinates (Bedgraph) into gene symbols?
Hi, processed data that I downloaded is in bedgraph format with chromosomal coordinates, but i need the gene symbols to make differential expression. I want to convert chromosomal coordinates into gene symbols or ensembl_ids, how i do that?!
chr1 17434 17439
chr1 17439 17440
chr1 17440 17443
thank you
• 1,533 views
•
link
written
by
LuisNagano •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to convert chromosome locations to gene symbols?
written by sooni •
-
bedtools genomecov issue with calculating coverage across called peaks?
written by lescano.v.jr •
-
How to analyze TCGA data downloaded by TCGA2STAT using TCGAbiolinks package
written by J. Smith
-
Get a bunch of ENTREZID into gene symbols
written by Kai_Qi
-
Transform Bedgraph counts into Gene Counts (DESeq2 input)
written by LuisNagano •
-
Convert NCBI SRA data to gene expression data
written by Eric Wang •
-
Gene symbol list
written by Siavash Salek Ardestani •
-
How can I select my Chip-seq genes (targets) in my Rna-seq data?
written by LuisNagano •
-
Converting Bed files to bedGraph
written by dally
-
Convert Fdr Control Q-Value To P-Value
written by J.F.Jiang
Hello LuisNagano!
Questions similar to yours can already be found at:
Also at the BioConductor forum:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!