extract annotation for mVISTA whole genome comparison
Dear all, I need to perform whole genome comparisons within cp genomes and I have to prepare specific annotation files to feed mVISTA server as described below :
< 106481 116661 gene1
106481 106497 utr
107983 108069 exon
109884 110033 exon
111865 112023 exon
> 39424 42368 gene2
39424 39820 exon
41401 42368 exon
> 77817 81088 gene3
77817 78820 utr
79538 80107 exon
Do you have any tool that could help me to extract automatically these information from gbk files. Thank you in advance.
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Michael G •
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slimane.khayi •
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slimane.khayi •
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I have written a blog post about how to set up a custom annotation file for the visualization of several genomes via mVISTA. The post includes an example using the plastid genome of Arabidopsis thaliana (i.e., is accessible to everyone via NCBI GenBank).
You can find that post here: https://blogs.fu-berlin.de/gruenstaeudl/2020/10/12/buena-vista-con-mvista/
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