How to get derived allele count for a list of SNPs
Hi all,
I was wondering how I can obtain the derived allele count for a list of SNP variants in human (hg 38)? I also have the corresponding vcf file for these variants. Also, please kindly let me know if I can use Fisher's test for comparing DAF (derived allele frequency) between populations? In this case, I also need the ancestral count for creating the contingency table, yes?
Any suggestions and comments would be highly appreciated.
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