Portal_client no valid url in the manifest file error
Hello everyone , I dowloaded portal_client to collect data from hmpdac.This client works at normal example_manifest , s3_manifest or ftp manifest but It doesnt wok at aspera_manifest.tsv .It say no valid url in aspera_manifest.csv.I check in aspera_manifest.csv and this is correct.How can I solve this problem? Have a idea? thanks for your comments.
This portal_client link=https://github.com/IGS/portal_client
I use first method my pc is win7.
This inside aspera_manifest.tsv
id md5 size urls
07c6c17c2b6f11e98849ef9e212bebbd ed8e04692fc34da01ee9c430612f6b58 3363519 fasp://aspera.hmpdacc.org/ptb/genome/microbiome/16s/hm16str/EP843963_K10_MCKD.trimmedseqset.fasta.gz
[This system error]
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There is a previous question that is likely related : Hmpdac I can't dowload data at fasp server
Are all values in your
.tsvfile tab-separated?Oh sorry , I close previous question and I am thinking like you.All of them seperated with tab.Below file example_manifest.tsv this is work but aspera manifest.tsv doesnt work. I am thinking maybe fasp server problem. I need IBDMDB data but all of them in fasp server and generally people use linux or mac for enter fasp server.(my system windows)
The problem is still going on.
Does this data require some kind of authorization for download? Is there support at the data site you can email to ask?
Hello genomax thank for your comments.I can dowload below link via aspera connect.(I entered below link at chrome).Aspera connect ask user id and password and I enter my hmpdacc account .
I get this link above manifest_tsv but this link is example link. I have to dowload below link
This time aspera connect say previous problem It say Error fasp managament terminated unexpectedly.
Between file is that I dowload example_manifest.tsv
In addition @genomax You are right.My 33001 and 22 ports closed now.I am not reaching my modem admin panel now but today I return my home and I will try opening this port.Aspera use this ports for dowload or uplooad I think
That will probably work. Be careful trying to download data from home. These files will likely be large.
If you want to add images to your post use these instructions: How to add images to a Biostars post
Thanks genomax sorry for my wrongs.
There are no wrongs. You may want to use imgbb image hosting provider as shown in instructions above in future. I can't see the image you posted above perhaps others can.