Output cmsearch Infernal
Hi, I am a beginner in the field and would like to better understand how it works for searching cmsearch and the values of the columns "seq from/seq to" to solve a problem. thank you
infernal
cmsearch
rna
• 1,101 views
•
link
written
by
ritmodasestrelas •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data analysis
written by Yasemin •Hi there, I am a beginner learner in Bioinformatics with a little bit of experience in R and python. I do have a project as …
-
Third Quartile (Q3) for RNAseq data
written by Leo •Hello! Could someone kindly explain to me how to select the Third Quartile (Q3) gene expression values? I'm processing RNAseq data from TCGA studies. For …
-
how to download part of protein sequence from pdb
written by garasubin9 •Hi, I am a new beginner in the field of bioinfomatics. I would like to obtain protein-protein/peptide complex sequences. How can I achieve this goal …
-
Annotating a VCF ignoring ALT
written by loy_loy •Hi everyone, I want to annotate a VCF and I am using bcftools annotate. It works so far but I also want to annotate variants …
-
Pseudocode for gapped BLAST seed extension
written by Daniel •Hello all, I am trying to understand in detail how does the gapped BLAST seed extension DP algorithm works. Despite searching for days now, I …
-
How to count the number of codons in a frame or order using the equation?
written by USER •Let's consider these values If you want to understand better you can access this link: http://codonw.sourceforge.net/DataRecoding.html how can I solve this problem?
-
How to extract the last 1000 nt from a group of sequences in a FASTA file?
written by Andrei •Hi everyone! I would like to know how I can extract the 1000 last nucleotides from sequence in a FASTA file and their headers using …
-
How does DEXSeq calculate exon usage values
written by sneha108.ss •Hi, I am using DEXSeq to identify differential splicing events from RNA-seq data and I did not completely understand how DEXSeq calculates exon usage. It …
-
how to detect and get genes with outlier expression from RNA-seq
written by rgescudero •I am interested in searching for genes having outlier overexpression from RNA-seq samples (hundreds). I have checked for outlier analysis tools, but most are focused …
-
How to perform eQTL study if i have small sample size?
written by akilabioinfo •Hi All, I would like to study the variant effect in gene expression (eQTL) Currently, I am having 4 RNA seq sample for the disease …
Your question is very unspecific und lacks details on what you do. Please read and apply Brief Reminder On How To Ask A Good Question in order to increase your chance of good answers.