I would like to find out how I can use python in RMarkdown. I would like to generate a PDF document of python code and text, using R markdown. I also have some R code that I would like to include in different places.
I want to input python code into Markdown and install all of the python packages too.
I have already installed the reticulate package into R and opened it using library(reticulate). I then typed use_python() , but i don't known what to do next or how to find the python on my computer.
I have IDLE installed on my machine, as I have recently learnt to use this rather than any package managers.
I specifically would like to do this with RMarkdown rather than Jupiter notebooks.
Do you have any ideas?
Regards
0 answers
No answers yet.
Log in to answer this question.
-
Leiden algorithm not working R studio scRNAseq
written by camillab. •
-
PHATE in R cannot detect matplotlib python dependency but numpy is fine
written by abhay.kanodia •
-
Rmarkdown on VS Code
written by Badran •
-
Beginner problem: install python3.7.12 but py_available() still return FALSE
written by zau saa •
-
Memory Error
written by cthangav •
-
Execute commands in Bash Chunk in Rmarkdown
written by M.O.L.S •
-
How to loop through a file to get a value for the coverage in each line of the samtools pileup file…
written by M.O.L.S •
-
miRDeep2.0.0.8 install error occured
written by Yamiru •
-
warning in R
written by zizigolu
-
Using markdown for two or more programming languages
written by Deepak Tanwar
Hello M.O.L.S!
We believe that this post does not fit the main topic of this site.
Not a bioinformatics question. You'll want to look for some markdown tutorials.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!