PASS filtering

Could you elaborate on this please :

It didn't work.

Try something like this :

for i in "file1.vcf" "file2.vcf"; do
echo $i;
grep -e "#" -e "PASS" /home/hpz440/Documents/example/input/$i > /home/hpz440/Documents/example/output/${i%.*}_PASS.vcf;
done;

Remove the double // on the output of your command line. Documents//example should be Documents/example

This is not a Forum. It is a question.

Hello yasminsoareslima!

We believe that this post does not fit the main topic of this site.

Not strictly a bioinformatics question (basic shell scripting). Take a look at walkthroughs like https://www.cyberciti.biz/faq/bash-for-loop/ for example. Pay particular attention to `${i}` syntax.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

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