What does cluster number in ClusterMaker represent?

While clustering a network using Community Cluster (GLay) in ClusterMaker it gives a cluster number for each cluster. What does this represent? I Initially thought it to simple numbers to distinguish between two clusters but I saw that the cluster with highest node is at #2 while the other major cluster with slightly less nodes is #1. This makes me raise the question.

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cytoscape clustering clustermaker network

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updated 7.5 years ago by scooter

• written 7.5 years ago by Arindam Ghosh

1 answer

In general, the cluster numbers are roughly ordered from largest cluster to smallest cluster, but each algorithm might treat these somewhat differently. Not sure why GLay isn't just ordering the clusters like other algorithms (e.g. MCL) do.

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written 7.5 years ago by scooter

That's my concern. Even in their example problem in their paper I saw a similar situation.

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written 7.5 years ago by Arindam Ghosh